PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122235001
Common NameGSBRNA2T00122235001, LOC106420023
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 485aa    MW: 53915.7 Da    PI: 7.5208
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122235001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.8e-10180221445
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                           k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  GSBRNA2T00122235001 180 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 221
                          5889*************************8766666655544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.7E-7177254IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289179223IPR004827Basic-leucine zipper domain
PfamPF001702.2E-7180221IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.0E-8180224No hitNo description
SuperFamilySSF579596.25E-7181223No hitNo description
CDDcd147085.47E-23181233No hitNo description
PROSITE patternPS000360184199IPR004827Basic-leucine zipper domain
PfamPF141442.5E-29262337IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDNHRVISEA TNHNDNHHLS YSLLHGLSNN PPPPGFINQD GSSCFDYGEL EEAMVLQGVN  60
SSSHEAKPRL FAGGGATTLE MFPSWPIRTH KSLPTESSKS GGESSDSESA NFSGKAESQL  120
PESPMSSKQN HHLMLQHHHS NNMANSTSAS GLPSTSRTLA PPKASEDKRK ATTSGKLLDA  180
KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQLEQE LQRARSQGMF MGGCGPPGPN  240
ITSGAAMFDM EYGRWLEDEN RHMSEIRTGL QAHLSDNDLR LIVDGYIAHF DEVFRLKAVA  300
AKADVFHLII GTWMSPAERC FIWMAGFRPS DFIKILVSQM DLLTEQQLMG IYSLQHSSQQ  360
AEEALSQGLE QLQQSLIDTL AASQVIDGMQ QMAVALGKVS NLEGFIRQAD NLRQQTVHQL  420
RRILTVRQAA RCFLVIGEYY GRLRALSSLW LSRPRETLIS DETSCQTTTD LQMVQSSRNQ  480
FSNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.247150.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122235001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3147570.0AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBankHQ1327430.0HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547307.10.0transcription factor TGA9 isoform X1
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A0D3DYF60.0A0A0D3DYF6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FMH30.0A0A3P6FMH3_BRAOL; Uncharacterized protein
STRINGBo8g112540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]