PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122092001
Common NameGSBRNA2T00122092001, LOC106420185
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 235aa    MW: 25989.4 Da    PI: 4.9256
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122092001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-07443538
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          C+ +e+ +++  C  ++  lC++C +e+H        H+
  GSBRNA2T00122092001  4 QCDVCENAPATVICCADEAALCPKCDVEIHAAnklaskHQ 43
                         7*****************************6566776766 PP

2zf-B_box31.14.8e-105595438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         ++C+ ++ek + +fC +++ llC+dC +++H        H+
  GSBRNA2T00122092001 55 PRCDICQEKAAFIFCVEDRALLCKDCDESIHVAnsrsanHQ 95
                         79*****************************4344566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.172147IPR000315B-box-type zinc finger
CDDcd000219.36E-6345No hitNo description
SMARTSM003362.4E-7447IPR000315B-box-type zinc finger
PfamPF006432.6E-5444IPR000315B-box-type zinc finger
PROSITE profilePS501199.8835299IPR000315B-box-type zinc finger
SMARTSM003367.7E-165299IPR000315B-box-type zinc finger
PfamPF006431.0E-75595IPR000315B-box-type zinc finger
CDDcd000215.22E-85598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MKIQCDVCEN APATVICCAD EAALCPKCDV EIHAANKLAS KHQRLHLDSL ITKFPRCDIC  60
QEKAAFIFCV EDRALLCKDC DESIHVANSR SANHQRLLAT GIKVALSSSS CTKETEKDQS  120
KEIPAKTLSQ KQPSSSATTP LPWAVDDFLH FSEPEFTDKK GELDLGEFEW FSDMGFFGDQ  180
TLPAAEVPEL SVSHMGQVHS YRPMKSNVSY KKPRLEIRGG DDDDEEHFIV PDLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.101741e-122leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122092001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3869731e-120JN386973.1 Brassica napus salt tolerance protein (STO-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716486.11e-174PREDICTED: B-box zinc finger protein 24-like
SwissprotQ962881e-135BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA0A078F0281e-174A0A078F028_BRANA; BnaA09g50090D protein
STRINGBra032441.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27112767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-136DBB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]