PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121598001
Common NameGSBRNA2T00121598001, LOC106369643
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 247aa    MW: 28586.2 Da    PI: 6.5244
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121598001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.88.5e-12138185552
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                          ++ +r+++NRe+ArrsR R++  i++L++ v +L+ eN++L ++l   
  GSBRNA2T00121598001 138 RKRKRMESNRESARRSRMRRQSHIDNLRNQVNQLDLENRELGNRLRLV 185
                          67899**********************************999666544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.8E-11128183No hitNo description
SMARTSM003382.0E-14134198IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.783136199IPR004827Basic-leucine zipper domain
PfamPF001702.5E-9138183IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-10138186No hitNo description
CDDcd147022.04E-18139185No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLSTVPAISF LEPGTVNHFS GFQTGFTPWE GDCFDLLSMN QFLIEPVVPS PCYGESDSGL  60
VRTNSGFDDI KTGSDESCAG FIKPGFEDTV SSQGLLCTQG DKPDPDDPKQ WTALANFEPG  120
EKKHNRNKLI QPEMTDERKR KRMESNRESA RRSRMRRQSH IDNLRNQVNQ LDLENRELGN  180
RLRLVIYHLQ QVNTDNNRLV TEQEMLRLRF SELRRILILR QLQQQQQWEL NNRRMIMYEQ  240
NPSTII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121598001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665225.10.0light-inducible protein CPRF2
TrEMBLA0A3P5Z0Q10.0A0A3P5Z0Q1_BRACM; Uncharacterized protein
STRINGBra011780.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.12e-77basic leucine-zipper 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]