PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117107001
Common NameGSBRNA2T00117107001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 249aa    MW: 28678.7 Da    PI: 7.2612
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117107001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.35.6e-3239144199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k ltpsdv+k++rlv+pk++ae++           e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+
  GSBRNA2T00117107001  39 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaADAMEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVILFH 128
                          99*****************************99555568889************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                          +++ ++++++++++r+
  GSBRNA2T00117107001 129 RHRVDGGRFFIGWRRR 144
                          87779*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-4033152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-3036144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-2738143No hitNo description
SMARTSM010199.5E-2439145IPR003340B3 DNA binding domain
PfamPF023621.4E-2939144IPR003340B3 DNA binding domain
PROSITE profilePS5086314.14239145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSINQYSSDF NYHSLMWQQQ QHRHHHHQND VAEEKEALFE KPLTPSDVGK LNRLVIPKQH  60
AERYFPLAAA AADAMEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKQLD  120
AGDVILFHRH RVDGGRFFIG WRRRGNSSSS SDSYRHLQSN ASLQYYPHAG VQAVESQRGN  180
SKTLRLFGVN MECQLDSDLS DPSTPDGSTI CPTSHDQFHL YPQQHYPPPY YMDISVTGDV  240
HQTRSPQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-463614711120DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117107001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325750.0AC232575.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010A05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143617.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ21e-145Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A078CJ450.0A0A078CJ45_BRANA; BnaA05g08190D protein
STRINGBra005301.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-109B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]