PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116725001
Common NameGSBRNA2T00116725001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 326aa    MW: 34579.2 Da    PI: 10.1796
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116725001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.34.7e-3758145290
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssa 82 
                          + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++         +        
  GSBRNA2T00116725001  58 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsvngtlkipT-------- 139
                          57999***********************************************************888884442111111111........ PP

                  TCP  83 snsssgka 90 
                             +++++
  GSBRNA2T00116725001 140 T--TNADS 145
                          1..11111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3063143IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32764118IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MATIKHHEDE RLRAVDLTSK PFEVNNAVSL EPKTEPSLES SLQVPSTSMS LAPPSRPPLK  60
RASTKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD GETIRWLLEN AEPAIIAATG  120
TGTVPAIAMS VNGTLKIPTT TNADSDVGDN SAKKRRKRPS NSEYIDINEA VTVSVSSGLA  180
PISSGLAPIS SGLAPVTTVS QQTLPQGMIP MWAIPSNAVI PTVGAFFLVP HVAGPTNQPQ  240
MLAFPAAPPS SYVAAVQQAS LMARPPFVSV STPSVMAPSS SSGVTNRGSS SSTTNMLRDF  300
SLEIYEKQEL HQFMSTTTAR SSSNH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.281230.0microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116725001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895801e-136AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143160.10.0PREDICTED: transcription factor TCP9
RefseqXP_013748133.10.0transcription factor TCP9-like
RefseqXP_022561503.10.0transcription factor TCP9-like
SwissprotO646471e-143TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A397Z7960.0A0A397Z796_BRACM; Uncharacterized protein
STRINGBra004929.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-138TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]