PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116705001
Common NameGSBRNA2T00116705001, LOC106454618
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 189aa    MW: 20738.6 Da    PI: 6.7714
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116705001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.89e-39151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r++a+s+l+yeA ar+rdPvyG+vg++l+lq+q+++
  GSBRNA2T00116705001  15 PCGACKFLRRKCVSGCVFAPYFDAEQgTATFAAVHKVFGASNASKMLLRLPLNKRHEAVSTLCYEALARLRDPVYGSVGHLLSLQHQVMN 104
                          7***********************9988************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ae+a+++++
  GSBRNA2T00116705001 105 LQAEIAHVQAR 115
                          ******99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.20614116IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-3815113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTGNLNGGGR GGEGPCGACK FLRRKCVSGC VFAPYFDAEQ GTATFAAVHK VFGASNASKM  60
LLRLPLNKRH EAVSTLCYEA LARLRDPVYG SVGHLLSLQH QVMNLQAEIA HVQARLSAFQ  120
RVSIIPPQQM QQPPHNNEYP VEQTNLDFVW EEEQLPQAGN EDGEFQELAM QFVSKYLTEV  180
KLPACTFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-34111137110LOB family transfactor Ramosa2.1
5ly0_B1e-34111137110LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116705001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-170AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143138.11e-139PREDICTED: LOB domain-containing protein 19-like
RefseqXP_013752185.11e-139LOB domain-containing protein 19
SwissprotO221326e-92LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A291LR701e-138A0A291LR70_BRARR; Transcription factor LBD19
TrEMBLA0A397ZDV01e-138A0A397ZDV0_BRACM; Uncharacterized protein
TrEMBLM4CL221e-138M4CL22_BRARP; Uncharacterized protein
STRINGBra004908.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-90LOB domain-containing protein 19
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]