PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113586001
Common NameGSBRNA2T00113586001, LOC106439955
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 367aa    MW: 40739.3 Da    PI: 6.6787
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113586001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.79.1e-3067174389
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                          g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ak  +++l+ +                           
  GSBRNA2T00113586001  67 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEAAKDDVDKLPPLqfphgfnqmypnlffgnsgigesstst 156
                          78*************************************************************666666555555555555554443333 PP

                  TCP  66 .....ssssaseceaesssssasnsssg..........k 89 
                               +                     +           
  GSBRNA2T00113586001 157 safpgT---------------------NlgflesydlgG 174
                          222220.....................122333333321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.1E-2768192IPR005333Transcription factor, TCP
PROSITE profilePS5136929.71168126IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MRSRECDEEE IQAKQEGDHN ENNNHQVNLN NMLQQQQQNQ PSSLSSSRQW TSAFRNPRIV  60
RVSRTFGGKD RHSKVCTVRG LRDRRIRLSV PTAIQLYDLQ DRLGLSQPSK VVDWLLEAAK  120
DDVDKLPPLQ FPHGFNQMYP NLFFGNSGIG ESSTSTSAFP GTNLGFLESY DLGGSSSRTR  180
SRIQETPRES FDLDKGKWIK NDENANHHQD HGFDASHQHF SLTNPYNNSN ASSYYNLGHL  240
QHSLDQSGNN VTVAISNVPS NNNNNNLNLP PPSSAGDGSQ LLFGPPPPAM SSLFPTYPSF  300
LGASHHQHHH VVDGAGNLQL FSSNANTASQ QQMMTGNSSL IRPFHHLMSS NHDTDRHSSD  360
DNDSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1973127155Putative transcription factor PCF6
5zkt_B6e-1973127155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113586001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736975.10.0transcription factor TCP5
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A398A3F50.0A0A398A3F5_BRACM; Uncharacterized protein
TrEMBLM4D9300.0M4D930_BRARP; Uncharacterized protein
STRINGBra012990.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-161TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]