PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112929001
Common NameGSBRNA2T00112929001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 354aa    MW: 40345.2 Da    PI: 6.8011
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112929001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.98.5e-39842262129
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec.....eaesssssas 83 
                           +kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++    +++    +     e +++++ ++
  GSBRNA2T00112929001  84 VVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkkvNTDED--FaniggE-VEEEEDDG 170
                          589*************************************************************76522222..2233321.22222222 PP

                  TCP  84 nsssg............kaaksaakskksqksaasalnlak.esrakarararertrek 129
                              +            +++  + k+ +++k++ + +n++   srakar +a+e tre 
  GSBRNA2T00112929001 171 ---DKsfvygsspdsleEEMVCEVKKAQKRKKKIELRNISSkGSRAKARRKAKEITREM 226
                          ...1123455666666688888888888888888888888779***********99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.90886144IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-3886226IPR005333Transcription factor, TCP
PROSITE profilePS513708.663209226IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSSSNNDYNN GNNGVYPFSL YLSPLAGHQD IIRNPYNHQP TPSPGQMVSA VPESLINYMS  60
FSSNRAVNQQ GFEIPEVSRE IKKVVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM  120
LGFDKASKTL DWLLKKSRRA IKELVQEKKV NTDEDFANIG GEVEEEEDDG DKSFVYGSSP  180
DSLEEEMVCE VKKAQKRKKK IELRNISSKG SRAKARRKAK EITREMTYDH PETISEITQT  240
ETMDPLKRST IFNEGEDMTH SLYKEATQEF DSQECTLSKA KVNLPTNMDQ SYNQHYGTFM  300
LKDQGSSSNY NNILPQNLDF YYDQNPFIDQ PFCAVTKTNF PRGKVLIQVS DLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1391144154Putative transcription factor PCF6
5zkt_B8e-1391144154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196VKKAQKR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112929001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701294.10.0transcription factor TCP1-like
SwissprotQ9FYG71e-166TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A3P6GWJ80.0A0A3P6GWJ8_BRAOL; Uncharacterized protein
STRINGBo6g103670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-152TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]