PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112568001
Common NameGSBRNA2T00112568001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 308aa    MW: 34371.9 Da    PI: 10.0579
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112568001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.11.2e-32531562106
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa 70 
                           g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++                     +s s+
  GSBRNA2T00112568001  53 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLnntnfpmndddnqiptltgaaNSLSK 142
                          689*************************************************************76666666555555544433322222 PP

                  TCP  71 seceaesssssasnsssgkaaksaakskksqksaas 106
                          s+c                      +s++++++++s
  GSBRNA2T00112568001 143 SAC----------------------SSNSDTSKNSS 156
                          333......................22222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3354158IPR005333Transcription factor, TCP
PROSITE profilePS5136931.22955113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVIEKLRNEI IGDDEMIGDL MKNNNGDVVD NSNNRLSRWH HNSSRIIRVS RASGGKDRHS  60
KVWTSKGPRD RRVRLSVSTA LQFYDLQDRL GYDQPSKAVE WLIKAAEDSI SELPSLNNTN  120
FPMNDDDNQI PTLTGAANSL SKSACSSNSD TSKNSSVFQL RFDSRVGSDP LPDPNKLSPL  180
LRSSSSSSSR VFLRSRPSDI SGRIQRRWSF QSRLQHVDNL RGVHRVQWFQ QGDPSVQCNK  240
SSSVFSCQST EVSIIRSGGG GPQFLFGTGG LPAENQHPHH NNNNNHQFQL YYENGCRNSD  300
QKGKAKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2360114155Putative transcription factor PCF6
5zkt_B7e-2360114155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.166450.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112568001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895530.0AC189553.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006A08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013706936.11e-106transcription factor TCP2-like
TrEMBLA0A3P6EJF41e-104A0A3P6EJF4_BRAOL; Uncharacterized protein
STRINGBo7g105960.11e-102(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.27e-61TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]