PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111491001
Common NameGSBRNA2T00111491001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 347aa    MW: 39030.1 Da    PI: 8.0313
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111491001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-32174227255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSBRNA2T00111491001 174 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 227
                          9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-15171227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28172227IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23174227IPR006447Myb domain, plants
PfamPF002492.2E-7175226IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSQ PSSTSKTTNN HHHHPLEDRS LSNNSHRHQQ QHPHLLPNCN  60
GSNIFTSFQF PTQQQQHLQG FLAHDLNTHL RPIRGIPLYQ NPPPHHHHRP PPCFPFDPSS  120
LIPSSSPTPT GINNNSFGTS RVNPNHHNHQ HHHQTLNRAR FMPRFPAKRS MRAPRMRWTT  180
TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSEQ  240
SDVYENGSSG DNNSDDWMFD MNRKSRDSDE LTNPLEKSNG RWTNSSGEAR LHGKLIDNVA  300
EIILPSENEI DGKSSSYERI SSEEMSSSNS SGTSPFKPNL EFTLGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111491001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0292110.0BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.
GenBankAB4934910.0AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240.
GenBankAY0486890.0AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587706.10.0PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ9C6161e-164KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A078EP510.0A0A078EP51_BRANA; BnaC05g24390D protein
STRINGBra023254.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53872850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-130G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]