PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111064001
Common NameGSBRNA2T00111064001, LOC106452488
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 258aa    MW: 29084.1 Da    PI: 7.4954
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111064001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.55.6e-3324134199
                          EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                          f+k ltpsdv+k++rlv+pk++ae++             +++e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD
  GSBRNA2T00111064001  24 FEKSLTPSDVGKLNRLVIPKQHAERYlplnncgggddvTESTEKGVLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSRYVKDKHLNAGD 113
                          99********************************99996677899********************************************* PP

                          EEEEEE-SS.SEE..EEEEE-S CS
                   B3  79 fvvFkldgr.sefelvvkvfrk 99 
                          +v+F+++ r +  +l+++++r+
  GSBRNA2T00111064001 114 VVLFQRH-RfDIHRLFIGWRRR 134
                          *****65.44888899999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-4016141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-3119136IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-2923123No hitNo description
SMARTSM010195.2E-2524135IPR003340B3 DNA binding domain
PROSITE profilePS5086313.76124135IPR003340B3 DNA binding domain
PfamPF023626.2E-3024134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSVNHYSNTL SSHNHHIDHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGDD  60
VTESTEKGVL LSFEDESGKS WKFRYSYWNS SQSYVLTKGW SRYVKDKHLN AGDVVLFQRH  120
RFDIHRLFIG WRRRGETSSF SAVSAVSQDP RANTTAFWNV LTTPYRQVHA STSSYPNNIH  180
QEYSHYGPVA ETPTVVAGSS RTVRLFGVNL ECHSDVVEPP PCPDAYNGQH IYYYSTPHPM  240
NISYAGEAME QVGDGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-442113411117DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.54280.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111064001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895470.0AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750081.10.0PREDICTED: B3 domain-containing protein At3g11580-like isoform X2
SwissprotQ8RYD31e-143Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A078EIW60.0A0A078EIW6_BRANA; BnaC05g41640D protein
STRINGBra034828.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-144B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]