PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00108683001
Common NameGSBRNA2T00108683001, LOC106372076
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 318aa    MW: 35046.1 Da    PI: 8.1312
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00108683001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1172.4e-36461622135
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 
                           g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i el+  ++s  +                  a 
  GSBRNA2T00108683001  46 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAAADSISELPPINTSFDQ------------------AL 117
                          689************************************************************9555552..................22 PP

                  TCP  92 ksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                          + +++  +s +s++s l+l++ esr kar+rarert+ ++ ++ +
  GSBRNA2T00108683001 118 SLSKSACSSGTSESSLLSLSRtESRGKARERARERTATDKDKDLQ 162
                          2223344555666777999999**************998877655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-3347129IPR005333Transcription factor, TCP
PROSITE profilePS5136931.80248106IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.328139159IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEVDDDIDAQ QQTSRKLQRI SSDNDKNGMR DWNNPSSRII RVSRASGGKD RHSKVLTSKG  60
LRDRRIRLSV ATAIQFYDLQ DRLGFDQPSK AVEWLINAAA DSISELPPIN TSFDQALSLS  120
KSACSSGTSE SSLLSLSRTE SRGKARERAR ERTATDKDKD LQNAQSSFTQ LLTGGFDEPN  180
RNWIGGSSSD CFTPVQLIPS PSSSSSLHHY NNSNHRQETS LNHHQNHFSF VPDYNFGISS  240
SDSPGAAAVN GGCYTSRGTL QSNSHSLFLN NNNVNQRATP PPLDHHNHQL PATFDGRLYL  300
YYGEGNRSSD DKGKDGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2153107155Putative transcription factor PCF6
5zkt_B2e-2153107155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00108683001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586014.10.0PREDICTED: transcription factor TCP24-like
RefseqXP_013586016.10.0PREDICTED: transcription factor TCP24-like
RefseqXP_013667658.10.0transcription factor TCP24
RefseqXP_013667659.10.0transcription factor TCP24
RefseqXP_022558608.10.0transcription factor TCP24
SwissprotQ9C7581e-143TCP24_ARATH; Transcription factor TCP24
TrEMBLA0A0D3CES10.0A0A0D3CES1_BRAOL; Uncharacterized protein
STRINGBo5g062580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-117TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  3. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]