PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00108111001
Common NameGSBRNA2T00108111001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 265aa    MW: 29726.1 Da    PI: 5.2559
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00108111001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.72.5e-08130176854
                          HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                          + + +NRe+A rs ++K     eLe+kv++Le++ + L  el+  k 
  GSBRNA2T00108111001 130 KIALSNRESAARSKEKKALHESELEDKVETLETQIDILTAELKLEKR 176
                          55789**********************************99987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-7119177No hitNo description
SMARTSM003384.3E-8123187IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-8127178No hitNo description
PfamPF077165.4E-7134176IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDGHADIPPS HSGLSQYPRA NPFGDESSNR ATMPPPSGSS LPPFPLRLRI PPTGQPFQFG  60
SQNFIPAGSS PSQWMLSQVP HTMLESSSVG SGSSQPASVF SGLFNADQLS KIAASNELKE  120
MAESDPKHLK IALSNRESAA RSKEKKALHE SELEDKVETL ETQIDILTAE LKLEKRERMT  180
ADDECVQFRI RLHAGEAHAR LREDLIEQLN GEVRRLTEEA SRLREEVNEY RRRESERMNA  240
NMLDQLNINQ QFQEKPQQTN YNFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00108111001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140264.11e-171PREDICTED: transcription factor VIP1-like
TrEMBLA0A078JX801e-162A0A078JX80_BRANA; BnaAnng36910D protein
STRINGBra030310.1-P9e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2350234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.34e-29bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]