PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107950001
Common NameGSBRNA2T00107950001, LOC106380258, LOC106443962
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 160aa    MW: 17309.4 Da    PI: 5.5494
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107950001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06446541
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          C+ +e+ e++  C +++  lC+ C  + H+       H +vp
  GSBRNA2T00107950001  4 QCEVCEKAEAEVLCCSDEAALCKPCDITVHEAnklfqrHHRVP 46
                         7*****************************7788999977776 PP

2zf-B_box292.2e-095895338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38
                         ++ C+ ++e +  +fC d++ llC+dC  ++H  ++H+
  GSBRNA2T00107950001 58 APLCDICKERKGYFFCLDDRALLCNDCDGAIHicSSHQ 95
                         689******99*******************98434476 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.793147IPR000315B-box-type zinc finger
CDDcd000214.53E-6347No hitNo description
SMARTSM003365.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.4145699IPR000315B-box-type zinc finger
SMARTSM003361.9E-125699IPR000315B-box-type zinc finger
PfamPF006431.7E-75895IPR000315B-box-type zinc finger
CDDcd000218.13E-85999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAALCKPCDI TVHEANKLFQ RHHRVPLQKP SSTTSSAAPL  60
CDICKERKGY FFCLDDRALL CNDCDGAIHI CSSHQRFLLS GVQASDQSLT KSSGCSTNLS  120
SETYHIQSKA SLNSQYSSEE NEAGNSGETD KTPSVILSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107950001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675506.11e-114PREDICTED: B-box zinc finger protein 23-like
RefseqXP_013740956.11e-114PREDICTED: B-box zinc finger protein 23-like
RefseqXP_013610737.11e-114PREDICTED: B-box zinc finger protein 23
SwissprotO826172e-89BBX23_ARATH; B-box zinc finger protein 23
TrEMBLA0A078EFH21e-114A0A078EFH2_BRANA; BnaC09g24580D protein
TrEMBLA0A0D3E8W81e-114A0A0D3E8W8_BRAOL; Uncharacterized protein
STRINGfgenesh2_kg.6__3002__AT4G10240.11e-88(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.16e-81DBB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]