PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107670001
Common NameGSBRNA2T00107670001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 2553aa    MW: 288235 Da    PI: 7.4803
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107670001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP87.14.1e-272113031089
                  TCP  10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                          k++ k +g++RR R++a+caar+F+L+ eLG+++d++tieWLlqqa p+  ++tgt++++a+ +  ++s +ss+s+ s++          
  GSBRNA2T00107670001 211 KRSRKDDGKGRRLRIPALCAARLFQLTGELGHKSDGETIEWLLQQAAPSLVAATGTGTIPANYSsLNVSLRSSGSTLSAPpssksvplyg 300
                          8999********************************************************987778888888888777763333344444 PP

                  TCP  89 ..k 89 
                            +
  GSBRNA2T00107670001 301 apA 303
                          331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136916.347209263IPR017887Transcription factor TCP subgroup
PfamPF036342.7E-25219324IPR005333Transcription factor, TCP
PfamPF004038.8E-6353394IPR006121Heavy metal-associated domain, HMA
PROSITE profilePS5169724.774462559IPR006936ALOG domain
PfamPF048521.1E-5501545IPR006936ALOG domain
SuperFamilySSF522002.22E-7587688IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015823.2E-7602698IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF009314.8E-20721965IPR002182NB-ARC
SuperFamilySSF525409.68E-36725957IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.8E-4734868IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF467851.71E-59331037IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.40.50.3005.3E-109851036IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520581.39E-2910551299IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.109.5E-2610621307IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077252.1E-911221141IPR011713Leucine-rich repeat 3
PROSITE profilePS514504.68611921214IPR001611Leucine-rich repeat
PROSITE profilePS514504.79312151235IPR001611Leucine-rich repeat
PROSITE profilePS514505.44812361258IPR001611Leucine-rich repeat
PROSITE profilePS514504.50812591281IPR001611Leucine-rich repeat
SuperFamilySSF522001.01E-3413701521IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101401.3E-1913771493IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010423.14513791518IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015824.4E-4113801547IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002556.7E-4913801518IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525408.69E-4815471803IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.0E-2515641810IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.3E-715751697IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003646.9E-1715791594No hitNo description
PRINTSPR003646.9E-1716511665No hitNo description
PRINTSPR003646.9E-1717441758No hitNo description
SuperFamilySSF520582.55E-4218151830IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.2E-2418732155IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.55E-4218802239IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514505.17119631985IPR001611Leucine-rich repeat
PROSITE profilePS514504.55520102032IPR001611Leucine-rich repeat
PRINTSPR003646.9E-1720292045No hitNo description
PROSITE profilePS514504.88620772100IPR001611Leucine-rich repeat
PROSITE profilePS514505.20221012123IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.104.1E-921732246IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514505.37921742195IPR001611Leucine-rich repeat
PROSITE profilePS514507.21121972218IPR001611Leucine-rich repeat
PROSITE profilePS514504.73922202242IPR001611Leucine-rich repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0030001Biological Processmetal ion transport
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2553 aa     Download sequence    Send to blast
MSAPGKSDYS SGGPDRPLYR SNLASQMARS SSFRETMEQP VSSSHASMLR TTSPLAQTDV  60
TNFFQCLRFD PKVVAADHKS VRQGDFKRHV NIGLGIQGDE SPSTTPRGKL TPSPIPEEIK  120
RLKAGLRENI VKARERVIIF NEASSVFNKV FPTVPTKKRS RPEGFSVARE GSPHLVYPFL  180
KIVPKSAPPE YATLATTSSS PAAATSGVIT KRSRKDDGKG RRLRIPALCA ARLFQLTGEL  240
GHKSDGETIE WLLQQAAPSL VAATGTGTIP ANYSSLNVSL RSSGSTLSAP PSSKSVPLYG  300
APAASGDHTP PLSGFQRPSS LISEVTKEPG PEKSSKNKLV LELDISGDKS MQKKVMKKLA  360
ALSGINYISL DPETGTLTIK GDIELNTVLE KVERYCSCKR VKVSGEPAMM AEPKKMYKRG  420
VSQGRVSMGK ALTSEQSLRS TAGSGDSCSG INIPGKSIIT PPNVRNLDAD WYSFCDFLDQ  480
RMRPLTLSGC TAKDAIDFLR MRQTSGNAEA LVGRLSAACE AYGITPKENP FRSLAVISYV  540
KETREITREA DYVLVFSCND NLDEDETHLI EAISKELHER EVAPLTYNLS QRENLDGDML  600
YRSSVGLMVV SSSLAYSSQS LDHLAAIMEF CKAKHLVIIP VYLKVTPSDI CGWEDRFEQV  660
LPSYLNSIQP DRIQKWKAAL TDVASIDGHQ WSEGSQFMLA KKVVRNACFR LHLKSSKNLV  720
RILALLNHPQ PLEAEIEGIW GMAGIGKTSI AREIFELLAP QYDLCYFLQD FHRMCKSKGL  780
RQIRDDFLSK VFREEELCLG ACDTKPSFMR DWFQNREILV VLDDVSNARD AEYVFGGFSW  840
FSRGHRIILT SRSKQVLVQC KVKEPYEIQK LSDFESLRLC KQYLKEESAI MSELMSCSSG  900
IPLALKSFVS SVSKQHMNDM KKHLQSLRIN PPTKIQEAFR RSFDGLDENG KNIFLDLACF  960
FRGENKEHVV QLLDACGFFT YLGICDLIDE SLISLLDNKI EIPIPFQDIG RFIVREEDMD  1020
PCERSRLWDS NDIIDVLTNN SGTEAIEGIF LDASDLTCEL SPTVFSNMYR LRLLKFYCSN  1080
TSGNQCKLSL PQGLDTLPDE LRLLHWEHYP LGYLPQKFSP ENLVEINMPY SNIEKLWEGK  1140
KNLEKLKKIK LSHSRKLTDV LTLSEAMNLE HIDFEGCTSM IDVSTSITHL GKLVSLNMKD  1200
CCHLRSLPSM VDLTSLKLLN LSGCSELEDI QDFSPNLEGL YLAGTAIREL PFSVENLTEL  1260
STLDLENCVR LQKLPSGVRN SRSIVNLKLS GCTILELGKR KRLLALQASY ASILVARALY  1320
KETLFYVGFL LDMSFVVPQE RIGLGFNLTG TLLPNEFNGS ESPSFPNRIM ASASSSSKRQ  1380
FDVFVSFRGA DTRTNFTSYL RQSLHRKGID TFFDEKLRRG QDLSVLFDRI EQSKMSIVVF  1440
SENYANSTWC LEELWKIMQC REKRGHGVIP IFYKVKKFDV ENQKGSFEAP FKNPKECLKG  1500
DGQKVGAWKE ALRAASNILG FVLPEERPES EFVEKIAKET FRMLNDLSPC EISGFPGIES  1560
RSKKLEELLM FDNANCVRAI GVLGMTGIGK TKVADSVYKR NHRQFDGYYF LEDVDKELEW  1620
HTLSYLREKL LCKLLDEEDL DVRALGRLED FLRNKKVFIV LDNVTKENQI KDLIGPLEQY  1680
RKGSRIVITT RDKKLLQNNT DATYLVPRLN DWEAMELFSI GAFPENLYPP EEFLDLSNKF  1740
VYYAKGHPSA LKLLGSGLCK KEKTYWMEKW ERLRVMPDKE IQKELKRSYE ELDDEQRSIF  1800
LDIACFFRSE KADFMHDLMH AMGKEIGSES SIRRAGKRSR LWNHKDIRHV LEQRTGTECV  1860
RGIFFNMSNV EKIKLSPDVF IRMSNLKFLK FHNSHCSQWC DNDHKFQFCE GLDHFPDELV  1920
YLHWQGYPYN CLPSEFNPEE LVDLNLRYSH IKQPWETEKN TENLRWVDLS HSKGLLNLSG  1980
LSKAKNLERL DLEGCTSLAA LGSSIEQMNK LIYLNLRECT SLECLPEGIN LKSLKTLILS  2040
GCSNLQKFQI ISENIESLYL EGSAIKQVVE HIESLCNLIL LNLKNCRRLK SLPNDLYKLK  2100
SLQELILSGC SALESLPPIN EEMECLEILL MDGTSIRQTP EMICLSNLKL FSFCGSSIKG  2160
STWLVLLPFS GNSCLWDLYL TNCNIYKLPD NFSSLRSLRC LCLSRNDIET LPESIEKLYS  2220
LLLLDLKHCR NLNSLPVLPP NLQYVDAHGC VSLEKVAKPV TLPLVTERMH TTFIFTDCFK  2280
LNRAEQESIV DQAQLKSQLL ARTSLQHNHK GPVTDPLVAV CFPGSDIPSW LCNQRMGSSI  2340
ETDLVSHWCN SKFIGVSLCV VVSFEGHESC YANGLSVRCK CEFKNQNGQS ISFSFCLGGW  2400
NESCGSSCHE PRKLGSDHVF ISYNKFKVPV YRWSEESNEG NRCRPTSASF EFYLTDDTER  2460
KLESCKVTRC GMSLLYDPDE NDRGFQGTRV TDIVERTSSE AFVPVKGLSL SQVGARRNGI  2520
IRDEIPMNLK TLQFRPFGFV KGRVLSKYLA EV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A2e-40137415441169TIR-NB-LRR type resistance protein RPV1
5ku7_B2e-40137415441169TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDisease resistance protein that cooperates with RPP2A to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269|PubMed:15165183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107670001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672702.10.0probable WRKY transcription factor 19 isoform X2
RefseqXP_013672703.10.0probable WRKY transcription factor 19 isoform X1
SwissprotF4JT800.0RPP2B_ARATH; Disease resistance protein RPP2B
TrEMBLA0A0D3A4E20.0A0A0D3A4E2_BRAOL; Uncharacterized protein
STRINGBo1g021620.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.11e-128WRKY family protein
Publications ? help Back to Top
  1. Sinapidou E, et al.
    Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis.
    Plant J., 2004. 38(6): p. 898-909
    [PMID:15165183]
  2. Nieto C, et al.
    An eIF4E allele confers resistance to an uncapped and non-polyadenylated RNA virus in melon.
    Plant J., 2006. 48(3): p. 452-62
    [PMID:17026540]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]