PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103667001
Common NameGSBRNA2T00103667001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 323aa    MW: 35776 Da    PI: 7.4559
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103667001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.71e-07334435
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                          +C+ ++++e++ fC+ ++  lC+ C    H+
  GSBRNA2T00103667001  3 IRCDVCDKEEASVFCTADEASLCDGCDHRVHH 34
                         58*************************99974 PP

2zf-B_box32.71.5e-105894438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                         ++C+ ++ek++ lfC++++  lC+dC +++H+   Ht
  GSBRNA2T00103667001 58 PICDICQEKKALLFCQQDRAILCKDCDSSIHSAneHT 94
                         79*****************************657876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000219.40E-6334No hitNo description
PfamPF006431.1E-5334IPR000315B-box-type zinc finger
SMARTSM003362.9E-6447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.23955102IPR000315B-box-type zinc finger
SMARTSM003365.4E-1555102IPR000315B-box-type zinc finger
PfamPF006431.0E-85895IPR000315B-box-type zinc finger
CDDcd000218.37E-1160102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKIRCDVCDK EEASVFCTAD EASLCDGCDH RVHHANKLAS KHLRFSLLYP SSSKISSPIC  60
DICQEKKALL FCQQDRAILC KDCDSSIHSA NEHTKKHDRF LLTGVKLSPA SSVYKPTTES  120
PSSSQDCSVP APSKKPISAP QSQIKNSKIQ PSKISSDVGM NQWGSTSTIS EYLIDTLPGW  180
HVEDFLDSSL PPFGFSKSGD DDGVLPFMEA EGDSTKRNNN NTVSLPSKNM GIWVPQVPQT  240
LPSSYTNQYF PRDNNNIQFG MYNNKETSHG VETYAPVQNM KQQGQNKRWY DDGGFTVPQM  300
TTTTSTFTHP PLASNKKSRS FW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.179000.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103667001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895860.0AC189586.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012I05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588404.10.0PREDICTED: B-box zinc finger protein 21
SwissprotQ9LQZ71e-171BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A078CE190.0A0A078CE19_BRANA; BnaC06g36260D protein
TrEMBLA0A0D3D0X50.0A0A0D3D0X5_BRAOL; Uncharacterized protein
STRINGBra015835.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-155salt tolerance homolog2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]