PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103257001
Common NameGSBRNA2T00103257001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 335aa    MW: 34905.6 Da    PI: 6.6809
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103257001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.64.5e-3844139589
                  TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...nsssg.. 88 
                          k++ +++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  ++   +   +  
  GSBRNA2T00103257001  44 KKPCKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNASLRGGGGgfaQ---Ssk 130
                          7899**************************************************************888433333222222221...111 PP

                  TCP  89 ........k 89 
                                  +
  GSBRNA2T00103257001 131 ssslpmsfH 139
                          223333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.7347101IPR017887Transcription factor TCP subgroup
PfamPF036348.8E-3548151IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
METRTVEEAS LQLNSTENPS PGGGSVPTTS SNTAALAVVK SAVKKPCKDR HTKVDGRGRR  60
IRMPAVCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNASLRG  120
GGGGFAQSSK SSSLPMSFHG SGMSLYDDSN GSNGSSSSAV VDHSRKLEDY FKESDEVTGG  180
SSQKPGQFQD QELGPGMGRE TPTASVVPQP MWAVAPGSTN GGSAFWMLPM SGSGGREQMQ  240
QQQPGHQMWA FNPGSYPVGT GRVVTAAPMG SMMLGGQQLG LGVAEGNMAA ALRGGRGGDG  300
LGMTLEQHQH QHHQQHQEPN NQGEASENGG DDKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.79360.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103257001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592228.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G41e-144TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A0D3D0060.0A0A0D3D006_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GYA00.0A0A3P6GYA0_BRAOL; Uncharacterized protein
STRINGBo6g114530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.13e-76TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]