PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102917001
Common NameGSBRNA2T00102917001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 437aa    MW: 50371.9 Da    PI: 6.657
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102917001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.57.3e-23953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr e++ nrqvt+skR+ gilKKA+ELS+LCd+++ +++fs+tgk
  GSBRNA2T00102917001  9 KRLESTGNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGK 53
                         6889****************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.838161IPR002100Transcription factor, MADS-box
CDDcd002668.51E-28282No hitNo description
SuperFamilySSF554556.28E-27295IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-201257IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE  60
HSCIEDVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIQEFLGAR NQTIEGLSNQ  120
VAISQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQFHKEH YTKNQLLPLD  180
CTTTQFHSGI QLPLAMEGNN SMQEAHSMSW LPNNDNQETI LPGESSFIPH REMDGLNPVY  240
SNGFFESVKQ EDQMCSNQGQ QFEQLEQQQG HGCLGLQQIG EEFSYPTPFG TTLGMDEDQE  300
KKIKSEMELN NLQQQQQQQQ QQDPSSMYAP TANNGGCFQN PHDQSMFSTD HHHHYQHYQH  360
HQNWVPGSVF SQASYNQVCV PWELSNYVIH QTKYVSVYLV IAATKLITKE RAHHVCNLIL  420
WMMTLRMNKD EFEPLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-13192190MEF2 CHIMERA
6byy_B1e-13192190MEF2 CHIMERA
6byy_C1e-13192190MEF2 CHIMERA
6byy_D1e-13192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102917001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1431720.0AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603751.10.0PREDICTED: MADS-box protein SOC1
SwissprotQ7X9I00.0AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A3P6C9C00.0A0A3P6C9C0_BRACM; Uncharacterized protein
STRINGBo8g068060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.10.0AGAMOUS-like 65
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]