PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102522001
Common NameGSBRNA2T00102522001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 336aa    MW: 34794.4 Da    PI: 7.0894
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102522001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.61.1e-3838127489
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                           k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  ++    g    
  GSBRNA2T00102522001  38 VKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNASLRGGGGGG--Gstvf 125
                          5899**************************************************************98884333333333322..12344 PP

                  TCP  89 .k 89 
                           +
  GSBRNA2T00102522001 126 aQ 127
                          31 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3442139IPR005333Transcription factor, TCP
PROSITE profilePS5136927.4894296IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
METRTAEEAS LQLNSTENPS PGGGSVPSTA LAVVKSAVKK PSKDRHTKVD GRGRRIRMPA  60
VCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIATTGTG TIPANFSTLN ASLRGGGGGG  120
GSTVFAQSSK SSSLPMSFHG SGMSLYDDSN GANGSSSSVV VDHSRKEDYF NKESEVPSGS  180
SQKPGQFQDQ ELGPGPGMGR GTPTASVVPQ PMWAVAPGST NGGSAFWMLP MSGSGGREQM  240
QQQQPGHQMW AFNPGSYPVG TGRVVTAAPM GSMMLGGQQL GLGVAEGNMA AALRGGRGGD  300
GLGMTLEQHQ HQHHQQHQEP NNQGEASENG GDDKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.79360.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102522001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105865.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G41e-141TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A3P6B6Q20.0A0A3P6B6Q2_BRACM; Uncharacterized protein
STRINGBra016090.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.13e-76TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]