PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101573001
Common NameGSBRNA2T00101573001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 301aa    MW: 32638.3 Da    PI: 10.1173
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101573001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.99.6e-23187248162
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          e+elkrerrkq+NRe+A+rsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+  
  GSBRNA2T00101573001 187 ERELKRERRKQSNRESAKRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGA 248
                          89*******************************************************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.0E-7132IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-965132No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-18180247No hitNo description
PfamPF001702.5E-21187249IPR004827Basic-leucine zipper domain
SMARTSM003384.8E-21187251IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.311189252IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10190246No hitNo description
CDDcd147022.89E-20192243No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MWNSQHMMSP YGTPYAAVYP HGGGVSAHPG FPMRSQPQVQ KGPPLTTPGT PLNMDTPTKS  60
TGNTDNGLMK KLKEFDGLAM SLGTAADERK RSWNSSETEG STNGSDVNTT GADEPKLKRN  120
REGTPTKDEK RYLVLSCSFR SVSPSSGDDG VKPVQRAIVS PGVSANSNSF MSQSLAMVQP  180
ETWLQNEREL KRERRKQSNR ESAKRSRLRK QAETEELARK VEALTAENMA LRSELNQLNE  240
KSDKLRGANA ALLNNLKSSE PEKSVFGNKN SGSGCNESNS SSKLHQLLDT KPRADAVAAG  300
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101573001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3703070.0AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBankAY0630930.0AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBankX638960.0X63896.1 A.thaliana mRNA GBF3 for G-box binding factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725821.10.0G-box-binding factor 3-like
RefseqXP_022553254.10.0G-box-binding factor 3-like
SwissprotP427761e-160GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A3P6ADQ00.0A0A3P6ADQ0_BRAOL; Uncharacterized protein (Fragment)
STRINGXP_006397815.11e-162(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-141G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]