PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101541001
Common NameGSBRNA2T00101541001, LOC106429609
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 294aa    MW: 30929.3 Da    PI: 10.3157
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101541001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.8e-3743136397
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                           k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++    +   +  + ++++a 
  GSBRNA2T00101541001  43 LKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTNADAD 130
                          6999***********************************************************8888844421..111111111222222 PP

                  TCP  92 ksaaks 97 
                           ++++ 
  GSBRNA2T00101541001 131 VAENPA 136
                          222211 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3047124IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32748102IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MATIKKHEVA NTVSLEPKAE PSLEVPSISM SLAPPSSSIG PQLKRASTKD RHTKVEGRGR  60
RIRMPATCAA RIFQLTRELG HKSDGETIRW LLENAEPAII AATGTGTVPA IAMSVNGTLK  120
IPTTTNADAD VAENPAKKRR KGPSNSEYID INEPVSVSSG LAPASTAAQQ TLPPGMIPMW  180
AFPSNAVVPT VGAFFLVQNV AGPSNQPQIL AYPAAAAALP STYVAALQQA SSMARPPPPP  240
QVVPNFTGSV MAPSSSSGIA TKNMLRDFSV ESYNKKELHQ FMTTTTAPRS SNH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141AKKRRKG
2136140KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.281231e-130microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101541001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895800.0AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725814.10.0transcription factor TCP9
SwissprotO646471e-130TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A0D3B6W60.0A0A0D3B6W6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AFH80.0A0A3P6AFH8_BRAOL; Uncharacterized protein
STRINGBo3g038900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-118TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]