PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100193001
Common NameGSBRNA2T00100193001, LOC106408999
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 233aa    MW: 25222.1 Da    PI: 8.7269
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100193001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.22.7e-282103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +P +Gavg++ ++++
  GSBRNA2T00100193001   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATLFVAKFFGRAGLMSFISAVPELNRPALFQSLLFEACGRTVNPANGAVGILGAGNW 91 
                          6*********************9999777889********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  GSBRNA2T00100193001  92 HVCQAAVETVLR 103
                          ******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.571107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-232101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATLFVA KFFGRAGLMS FISAVPELNR  60
PALFQSLLFE ACGRTVNPAN GAVGILGAGN WHVCQAAVET VLRGGTLRPI SDLLESPSLI  120
SSNYSSEICN DIGRFSTSRT KLSTSDMKKP PVNRKRSKAE RSESVMDVQL NHGLDLTIPV  180
VPVPLLPPTP FRKVVNGERP GSPSEESVTT SCCENGIIGY NKRERKLLNL FV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.233120.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100193001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738741e-126AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721441e-126AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229761e-126AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595574.11e-170PREDICTED: LOB domain-containing protein 39-like
RefseqXP_013705142.11e-170LOB domain-containing protein 39
SwissprotQ9SZE81e-120LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0D3DI601e-168A0A0D3DI60_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FD691e-169A0A3P6FD69_BRAOL; Uncharacterized protein
STRINGBo7g118580.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-111LOB domain-containing protein 39
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]