PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098081001
Common NameGSBRNA2T00098081001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 331aa    MW: 36277.6 Da    PI: 9.9517
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098081001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.28.8e-14251302556
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                          +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ +  e+ k+ 
  GSBRNA2T00098081001 251 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLQRKQAEIMKTQ 302
                          79***************************************87766665543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-13247312IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.461249300IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-9251298No hitNo description
PfamPF001701.3E-11251304IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-13251305No hitNo description
CDDcd147071.12E-23251303No hitNo description
PROSITE patternPS000360254269IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGTHINFNSL GVDSSGGNGS DNSQSKPLGR QSSLYSLTFD ELQSTLGEPG KEFGSMNMDE  60
LLKNIWTAEE TTQPIMTTTS SVASVQQPSS GFAPGGGSLV QRQGSLTLPR TLSQKTVDEV  120
WKHLMSKDSS NGSDAPERQE TLGEMTLEDF LLRAGVVKED TPATMQQQQQ LQPPHQRLPP  180
TIYPKQANVT FAAPVNNNNS GFAAMGRGGV TVASTSPSAE NNAAWSSPVP YVFGGQGRRS  240
NTGVVEKVVE RRQKRMIKNR ESAARSRARK QAYTLELEAE IENLKQLNQD LQRKQAEIMK  300
TQKNELKEPS KQRPWLAKTQ CLRRTLTGPW *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. {ECO:0000269|PubMed:18931143}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269|PubMed:18931143, ECO:0000269|PubMed:19947981, ECO:0000269|PubMed:27325665, ECO:0000269|PubMed:27424498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098081001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) (PubMed:18315698, PubMed:18931143). Induced by drought, salt and osmotic stresses (PubMed:18931143). {ECO:0000269|PubMed:18315698, ECO:0000269|PubMed:18931143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1228920.0JX122892.1 Brassica napus ABA-responsive element binding factor 1 (ABF1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147888.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4
SwissprotQ6Z3128e-79BZP23_ORYSJ; bZIP transcription factor 23
TrEMBLA0A078IM390.0A0A078IM39_BRANA; BnaA06g03040D protein
STRINGBra018800.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.21e-66abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang Y,Tang N,Du H,Ye H,Xiong L
    Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice.
    Plant Physiol., 2008. 148(4): p. 1938-52
    [PMID:18931143]
  3. Shen J,Xie K,Xiong L
    Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses.
    Mol. Genet. Genomics, 2010. 284(6): p. 477-88
    [PMID:20941508]
  4. Luo C,Guo C,Wang W,Wang L,Chen L
    Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice.
    Plant Cell Rep., 2014. 33(2): p. 323-36
    [PMID:24247850]
  5. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  6. Sakuraba Y, et al.
    Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle.
    Plant Cell Physiol., 2015. 56(12): p. 2325-39
    [PMID:26443376]
  7. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]
  8. Dey A,Samanta MK,Gayen S,Sen SK,Maiti MK
    Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.
    PLoS ONE, 2016. 11(3): p. e0150763
    [PMID:26959651]
  9. Zong W, et al.
    Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes.
    Plant Physiol., 2016. 171(4): p. 2810-25
    [PMID:27325665]
  10. Dey A,Samanta MK,Gayen S,Maiti MK
    The sucrose non-fermenting 1-related kinase 2 gene SAPK9 improves drought tolerance and grain yield in rice by modulating cellular osmotic potential, stomatal closure and stress-responsive gene expression.
    BMC Plant Biol., 2016. 16(1): p. 158
    [PMID:27411911]
  11. Gui J, et al.
    OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.
    Dev. Cell, 2016. 38(2): p. 201-13
    [PMID:27424498]