PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097976001
Common NameGSBRNA2T00097976001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 165aa    MW: 18266 Da    PI: 9.2625
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097976001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.9e-43141131100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +Ca+Ck+lrrkC+kdCv+apyfpa++p kfa+vhk+FGasnv k+l+ l+ ++r+da++slvyeA+ar++dPvyG+vg+i++l++qle+l
  GSBRNA2T00097976001  14 PCAGCKLLRRKCVKDCVFAPYFPAKEPYKFAIVHKIFGASNVKKMLQVLSGNHRSDAVNSLVYEANARVQDPVYGCVGTISSLHRQLETL 103
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++la  ++e
  GSBRNA2T00097976001 104 QTQLAFSQAE 113
                          ****999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.64313114IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-4114111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRQKGHRHGG AVSPCAGCKL LRRKCVKDCV FAPYFPAKEP YKFAIVHKIF GASNVKKMLQ  60
VLSGNHRSDA VNSLVYEANA RVQDPVYGCV GTISSLHRQL ETLQTQLAFS QAELVHLKTL  120
HHVDTRSPPY MASSITFPTI KDFSSDVNMT FMYDNSAGES LWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-43101157112LOB family transfactor Ramosa2.1
5ly0_B2e-43101157112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. At the bases of lateral organs formed from vegetative, inflorescence, and floral meristems. {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:17485849}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097976001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710562.11e-118LOB domain-containing protein 3-like
SwissprotQ9SA511e-98LBD3_ARATH; LOB domain-containing protein 3
TrEMBLA0A078INJ51e-121A0A078INJ5_BRANA; BnaA09g56280D protein
STRINGBra026716.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16530.11e-101ASYMMETRIC LEAVES 2-like 9
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]