PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097952001
Common NameGSBRNA2T00097952001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 137aa    MW: 16106.4 Da    PI: 10.6667
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097952001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-112079463
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                          +  +rk +NRe++rrsR +K+++++ L+    +L +eN++L ++l     +++   +e+
  GSBRNA2T00097952001 20 EREKKRKKSNRESSRRSRMKKQKYLDDLRSQLNQLNTENRELGNKLRYVMHHCQGANMEN 79
                         456788999*************************************99999999777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-91670No hitNo description
SMARTSM003389.4E-121781IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1281965IPR004827Basic-leucine zipper domain
PfamPF001705.7E-82178IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.51E-102172No hitNo description
PROSITE patternPS0003602439IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEDRPSNLTG LNVFFPTKDE REKKRKKSNR ESSRRSRMKK QKYLDDLRSQ LNQLNTENRE  60
LGNKLRYVMH HCQGANMENE RLRVENQILH EKLMSLRQAL VLRQIQQSST CATWSCVNST  120
VVTVHQNPSM LRDHVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097952001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022551348.12e-95basic leucine zipper 9-like
TrEMBLA0A078JXY58e-96A0A078JXY5_BRANA; BnaUnng03790D protein
STRINGBo2g168170.16e-94(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.12e-20basic leucine-zipper 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]