PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097284001
Common NameGSBRNA2T00076094001, GSBRNA2T00097284001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 62aa    MW: 6363.3 Da    PI: 4.6362
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097284001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.45.8e-21157319374
                 GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++++GF pvpl+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  GSBRNA2T00097284001   1 MGSVGFDPVPLGSSAFKQASMLLSVFAgGDGYRVEENDGCLMLGWQTRPLIATSAWK 57 
                          7899****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.9E-18157IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:1903506Biological Processregulation of nucleic acid-templated transcription
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MGSVGFDPVP LGSSAFKQAS MLLSVFAGGD GYRVEENDGC LMLGWQTRPL IATSAWKLAG  60
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097284001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130367.12e-35PREDICTED: LOW QUALITY PROTEIN: DELLA protein RGL2
RefseqXP_013637838.12e-35PREDICTED: DELLA protein RGL2
RefseqXP_013747674.12e-35PREDICTED: DELLA protein RGL2 isoform X1
RefseqXP_013747675.12e-35PREDICTED: DELLA protein RGL2 isoform X2
SwissprotQ7Y1B66e-31GAI_SOLLC; DELLA protein GAI
TrEMBLA0A078I2073e-38A0A078I207_BRANA; BnaA05g32630D protein
TrEMBLA0A0D3CN132e-35A0A0D3CN13_BRAOL; Uncharacterized protein
STRINGBra031991.1-P5e-35(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2644523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-32RGA-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]