PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095272001
Common NameGSBRNA2T00095272001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 704aa    MW: 77395.7 Da    PI: 7.5643
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095272001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07153173526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ffa+ G C  G++C+F H+
  GSBRNA2T00095272001 153 PCKFFAQ-GRCTKGNSCRFLHV 173
                          7******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0043148174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5153174IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4153173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MSDSDMDIDD DEVQVNVQHT IAGESRLLAR PIEASNSQND VKKHLDEQLK IINGNLQPNL  60
SGNSGNNLFL EGEKGIILPS LRLPAPGQSY PLVNGPEQSK IINGYVQPNL SGSSGKKLML  120
EGEKDTVLSR DLVLRFLSLP PANGPEQKRP AYPCKFFAQG RCTKGNSCRF LHVNENMNRT  180
SQQQVVNNMA GTSGIQSIEE RRPLESKEGI RFPMLSTNGV TSLVNPPAGQ RVFPFTNEMR  240
FMPPLENMGR GSLQKCGAVF TENRPVFGNS TSSFPLRSSF VQEYGSFITS NRQTDMGSSG  300
PAWTGSVFSS APLNQYASPF GNFENRNDIN GSEPLPMEQA LSVPSVQDAE VDTTSDTKEV  360
SSNDWEPSEP FRPSFTIPPY ILPSSDALYD PFTDIENPED RSPKAQSSTK GKDAQKKSGQ  420
QKDGDSASND KNSSCSQSQF QETVVRKNLE AHGVVEGVAT SVVDQNDASA TTPSKEISSS  480
AAVENRVVLK RSKPAGHESW HRSDGSSHQK KLKTDDMDGE VRSDAGTKVM RQFRTAVVET  540
IKDMLKPLWR EGRLSKDVHN MIVKRATEKI VSAAVQLHQV PTNSESVEKY LSMSSTRIVK  600
LVEGYVEKYG KPQSKPSGLA PIFLHLHFYP FTNNGRRWNW SSVEEFYVCL VFASKAGESG  660
KRKKQNNVEG TLSIILTILI TNCCFSFSIH GMSQVGVLPP NRT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root and shoot apices and vasculature. {ECO:0000269|PubMed:16291783}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095272001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013642153.10.0protein FRIGIDA-ESSENTIAL 1-like
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A078FW990.0A0A078FW99_BRANA; BnaA05g09820D protein
STRINGBo4g042370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]