PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094728001
Common NameGSBRNA2T00094728001, LOC106366054
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 216aa    MW: 23018.8 Da    PI: 9.8672
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094728001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.5e-39111753118
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                          +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++    s s  +++ + +   
  GSBRNA2T00094728001  11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV--SASLRGNSTTTScnl 98 
                          79*************************************************************9999977731..222222212222345 PP

                  TCP  89 ...............................................kaaksaakskksqksaasalnlak.esraka 118
                                                                         + a++++  +++q++aa  l +++ +++++a
  GSBRNA2T00094728001  99 sssldhkpllgvspfilgkrvradedtpsgfwavparqefgqvwsfaAGATQEMLLQQQQQQAA-GLFVHQqQQQQQA 175
                          5667788899999999999999999999999999999999999999655555555555555555.3444441333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8921670IPR017887Transcription factor TCP subgroup
PfamPF036343.7E-3516172IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL  60
RQAEPSIIAA TGTGTTPASF STVSASLRGN STTTSCNLSS SLDHKPLLGV SPFILGKRVR  120
ADEDTPSGFW AVPARQEFGQ VWSFAAGATQ EMLLQQQQQQ AAGLFVHQQQ QQQQAAMGEA  180
SAARVGNYLP GHLNLLASLS SGAPGSGRGE DDDQR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.139570.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094728001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661059.21e-142transcription factor TCP7
SwissprotQ9FMX21e-103TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A078FVP81e-156A0A078FVP8_BRANA; BnaA09g05400D protein
STRINGBo9g014260.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-59TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]