PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094723001
Common NameGSBRNA2T00094723001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 222aa    MW: 25782.1 Da    PI: 8.9293
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094723001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.1e-1382137358
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                          + +r+rr  +NRe+ArrsR RKk++ieeL++ v++L   N+ L +++ +l +   +
  GSBRNA2T00094723001  82 DERRARRVVSNRESARRSRMRKKKQIEELQQQVEQLMVLNHNLSEKVINLLESNHQ 137
                          6689****************************************999888766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-1480144IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.3E-1181138No hitNo description
PROSITE profilePS5021711.11682145IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-1084136No hitNo description
PfamPF001706.4E-1284142IPR004827Basic-leucine zipper domain
CDDcd147023.03E-1585136No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MIRHLKPNME SSPHRSHHCF DILEGMPPQD DHFNSSFLQN PNFHVHLQSI SPNLSTRSNN  60
NRSDHLDPNG EPFCHREGLD PDERRARRVV SNRESARRSR MRKKKQIEEL QQQVEQLMVL  120
NHNLSEKVIN LLESNHQIIQ ENSHLKEKVN SFHLLMAEML IPMRNVDGSI NDRDANHLRG  180
ETSNRTNTFF GSAFIFLIKA LYRDSRVCIE TRATHLKVLA N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.109180.0microspore-derived embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094723001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111959.11e-138PREDICTED: basic leucine zipper 43-like
RefseqXP_013659178.21e-138basic leucine zipper 43-like
TrEMBLA0A078FVP21e-160A0A078FVP2_BRANA; BnaA09g05450D protein
STRINGBo9g014350.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.14e-73basic leucine-zipper 70
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]