PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092115001
Common NameGSBRNA2T00092115001, LOC106385876, LOC106432328
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 225aa    MW: 23680.8 Da    PI: 7.0448
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092115001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.24.5e-41151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll+++pe++r da+ s+++eA+ r+rdP+yG+v++i +lqqq+ +
  GSBRNA2T00092115001  15 PCGACKFLRRKCVPGCIFAPYFDSDQgAAHFAAVHKVFGASNVSKLLHHIPEHKRADAVVSICFEAQSRLRDPIYGCVSHIVSLQQQVVS 104
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l++el++++++
  GSBRNA2T00092115001 105 LQNELSYVQAH 115
                          *******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.33914116IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3915113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSSGSPSSS GGGGPCGACK FLRRKCVPGC IFAPYFDSDQ GAAHFAAVHK VFGASNVSKL  60
LHHIPEHKRA DAVVSICFEA QSRLRDPIYG CVSHIVSLQQ QVVSLQNELS YVQAHLATLE  120
LPQPPPATVT SSGSLPPLSI SDLPTITPSM YDLSPILEPI SSTWPMQQQP RPSDHLFGVS  180
QSSSIGGGGE FQAIAREFLH GGQMSAHQPP PETGGSAPTV IKRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4051161111LOB family transfactor Ramosa2.1
5ly0_B1e-4051161111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092115001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619585.11e-162PREDICTED: LOB domain-containing protein 30-like
RefseqXP_013681231.11e-162LOB domain-containing protein 30-like
RefseqXP_013728621.11e-162LOB domain-containing protein 30-like
SwissprotO813231e-114LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A078JTH01e-161A0A078JTH0_BRANA; BnaCnng65080D protein
TrEMBLA0A0D3AS301e-161A0A0D3AS30_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CYZ21e-161A0A3P6CYZ2_BRAOL; Uncharacterized protein
STRINGBo2g097560.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.19e-94LBD family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  3. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]