PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092092001
Common NameGSBRNA2T00092092001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 221aa    MW: 24076.8 Da    PI: 7.3699
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092092001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.72.2e-3040114474
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 
                          ++++ +++h kv+gR+ RvRl+ +caar+F+L++eLG+++d++t++WLl+ a+p+i+ +tgt+ ++a+++     
  GSBRNA2T00092092001  40 QTKSRKDRHLKVEGRGGRVRLPPLCAARIFQLTRELGHKTDGETLQWLLRHAEPSIISATGTGIKPATDSvsqpP 114
                          67899*********************************************************8888855433332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-2443175IPR005333Transcription factor, TCP
PROSITE profilePS5136924.3154498IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDPNLLNPSE TETEVKKVLN NTVEGKRKWK QKGKEGREIQ TKSRKDRHLK VEGRGGRVRL  60
PPLCAARIFQ LTRELGHKTD GETLQWLLRH AEPSIISATG TGIKPATDSV SQPPPHAVDL  120
NLDGGSRSQL ANGFWGNETG FGVGANPTGG GLDLNCGIGF LGFDFNGSSD MGFENNQMPQ  180
DGVLNPLIYQ QIGQEQAKVL QHHHHHPHEA QQENADKQGS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092092001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140061.11e-142PREDICTED: transcription factor TCP6
SwissprotQ9FLM68e-65TCP6_ARATH; Transcription factor TCP6
TrEMBLA0A078IHS71e-161A0A078IHS7_BRANA; BnaA04g10760D protein
STRINGBra025528.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.11e-62TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]