PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090269001
Common NameGSBRNA2T00090269001, LOC106448440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 152aa    MW: 17836 Da    PI: 5.4221
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090269001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.66.4e-0912521050
                         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                           +NRe+A rs ++K     eLe+kv++Le++ + L  el+
  GSBRNA2T00090269001 12 TLSNRESAARSKAKKALHESELEDKVETLETQIDILTAELK 52
                         579********************************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-8352No hitNo description
SMARTSM003386.6E-7367IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-8755No hitNo description
PfamPF077166.3E-71452IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAESDPKHLK ITLSNRESAA RSKAKKALHE SELEDKVETL ETQIDILTAE LKLEKRGRMT  60
ADDECVQFRI RLHAGEAHAR LREDLIQQLN GEVRRLIEEA SVQREEMSRL REEVSEYRRR  120
ESERMNANML DQLNINQQFQ EKPQQTNYNF E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090269001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745779.11e-105transcription factor RF2b
RefseqXP_013746902.11e-105transcription factor VIP1-like
RefseqXP_022574550.11e-105transcription factor RF2b-like
TrEMBLA0A078FSR91e-104A0A078FSR9_BRANA; BnaA04g12040D protein
STRINGBra030310.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3067622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.37e-15bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]