PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089907001
Common NameGSBRNA2T00089907001, LOC106356330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 240aa    MW: 26807.9 Da    PI: 4.8169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089907001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-193483255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  GSBRNA2T00089907001 34 KYVGVRRRP-WGRYAAEIRNPTT---KERHWLGTFDTAEEAALAYDRAARSIRG 83
                         79*******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.0743491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-283491IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-213492IPR016177DNA-binding domain
PfamPF008477.9E-133483IPR001471AP2/ERF domain
CDDcd000188.39E-313490No hitNo description
SMARTSM003802.5E-323497IPR001471AP2/ERF domain
PRINTSPR003671.3E-83546IPR001471AP2/ERF domain
PRINTSPR003671.3E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDFNGNVNAG SSSRSKKSQK QQQPQPQQHT EEIKYVGVRR RPWGRYAAEI RNPTTKERHW  60
LGTFDTAEEA ALAYDRAARS IRGLTARTNF VYSDMPRGSS VTSFISPDES QRFISELFNP  120
PSQLEAPHSS NNNNLYLSAN NQNQISTEFS YNGWTHESEC GYQSMNTNDE HCNHELAPLP  180
PSTCSGAELT IPETDSYWNL AHAGMDTFSF DIDGFVNQNS LGESGTEGFD SSSSTFFYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1830901071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089907001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankAC0694710.0AC069471.4 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651550.10.0ethylene-responsive transcription factor ERF087
SwissprotQ9FZ901e-132ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A078FML01e-179A0A078FML0_BRANA; BnaA07g08610D protein
STRINGBo7g048420.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-112ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]