PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087979001
Common NameGSBRNA2T00087979001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 393aa    MW: 43126.4 Da    PI: 6.5939
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087979001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-10186244563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l  e+
  GSBRNA2T00087979001 186 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTLLQRDTNGLSVEN 244
                          9********************************************99998877776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-15182246IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.657184247IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-11186237No hitNo description
Gene3DG3DSA:1.20.5.1709.7E-11186240No hitNo description
PfamPF001704.9E-9186238IPR004827Basic-leucine zipper domain
CDDcd147036.24E-25187236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDKEKSPSGG LPPPSGRYSS FPHLTPPPSG SSDANRFSHD ISRMPDNPPK NLGHRRAHSE  60
ILTLPDDLSF DSDLGVVGGA ADGPSFSDDA DEDLMSMYLD MDKFNSSASS SCEPAELVWR  120
NELGSTTTPG GGGGSSERPR IRHQHSQSMD GSTSLMSGSE DVSGGVDSKK AISAAKLSEL  180
ALIDPKRAKR IWANRQSAAR SKERKMRYIA ELERKVQTLQ TEATTLSAQL TLLQRDTNGL  240
SVENHELKLR VQTVEQQVHL QDALNDALKE EVQHLKVLTG QGVSNGGASS VMNYGSFGSS  300
NQQFYTNNQS RHTMQAAQQF QQLQIHSQKQ QQQQQFQFQQ QQQLYQLQLQ QQRIQQQEQQ  360
SGGAEPRRPM SSSGQKESAT SSPDLEFPST KN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.128690.0microspore
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087979001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119093.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-165POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A078IEV20.0A0A078IEV2_BRANA; BnaA10g04020D protein
STRINGBra015471.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-146bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]