PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086514001
Common NameGSBRNA2T00086514001, LOC106380109
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 302aa    MW: 33732.1 Da    PI: 6.7228
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086514001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.27.3e-3161166389
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                          g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  ++el+ +                           
  GSBRNA2T00086514001  61 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQVYDLQDRLGLSQPSKVIDWLLEAAKDDVDELPPLqfpqgfnqmypslifgessstsaastf 150
                          78*************************************************************555555444444444433322222222 PP

                  TCP  66 ..ssssaseceaesssssasnsssg...........k 89 
                            +                     +           +
  GSBRNA2T00086514001 151 pgT---------------------NlgfleswdlggS 166
                          220.....................1333433334331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.42462120IPR017887Transcription factor TCP subgroup
PfamPF036349.6E-3062194IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRSRDCDEDE IQANQEGDHN HQLNLNSMFQ PQNQPSSVPT SRQWTSAFRN PRIVRVSRTF  60
GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS QPSKVIDWLL EAAKDDVDEL  120
PPLQFPQGFN QMYPSLIFGE SSSTSAASTF PGTNLGFLES WDLGGSSSRT RTRIADTTTT  180
PRESFDLDKG KWIKQDENSN HQDHGFDISH QNFSLTNPYN NNSTSSYYNL GHLQNSLDQS  240
GNNVTVAIPN VPYNNNLNLP PPPTMSSLFP MYPSFLGASH QVVDGAGNLQ LFSSNANRNN  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1867121155Putative transcription factor PCF6
5zkt_B4e-1867121155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086514001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675381.10.0transcription factor TCP5
SwissprotQ9FME31e-146TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A078I7W60.0A0A078I7W6_BRANA; BnaC02g41900D protein
STRINGBo2g161240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-122TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]