PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086429001
Common NameGSBRNA2T00086429001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 231aa    MW: 24811.1 Da    PI: 11.1222
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086429001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.47.4e-40341903118
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                          +kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++    ss+s ++++   
  GSBRNA2T00086429001  34 VKKAPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStTSTCTISSSSLDHKPllg 123
                          79*************************************************************999997775222223333322333556 PP

                  TCP  89 ......................................kaaksaa.kskksqksaasalnlakesraka 118
                                                                + a+ ++  ++++q++aa   ++ +++r+++
  GSBRNA2T00086429001 124 sspfilgkrvregsrgaipagswsvparpefgqvlsfaAGAPHEMfLQQHQQQQAA--AHFVHQQRQQQ 190
                          78888888888999999999999999999999999987444444435555555555..55555555443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3339186IPR005333Transcription factor, TCP
PROSITE profilePS5136927.593993IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFNTTNGVMI SNGDILERQR QKQQQQPSEG ALVVKKAPAK DRHTKVDGRG RRIRMPIICA  60
ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTTSTCT ISSSSLDHKP  120
LLGSSPFILG KRVREGSRGA IPAGSWSVPA RPEFGQVLSF AAGAPHEMFL QQHQQQQAAA  180
HFVHQQRQQQ GAIGEASAAR VGNYLPGHLN LLASLSAGAP GSGRREYCPR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086429001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436782.11e-126PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX27e-96TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A078IAS81e-168A0A078IAS8_BRANA; BnaA02g32950D protein
STRINGBo2g160970.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-76TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]