PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085770001
Common NameGSBRNA2T00085770001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 262aa    MW: 28544.6 Da    PI: 7.0752
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085770001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.3e-15225259133
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                          C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ k
  GSBRNA2T00085770001 225 CRHCGIGEksTPMMRRGPEGPRTLCNACGLMWANK 259
                          ****865556**********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.6E-1180115IPR010399Tify domain
PROSITE profilePS5132014.51380115IPR010399Tify domain
PfamPF062002.4E-1182114IPR010399Tify domain
PfamPF062038.4E-16148190IPR010402CCT domain
PROSITE profilePS5101713.096148190IPR010402CCT domain
SuperFamilySSF577161.24E-9218258No hitNo description
SMARTSM004015.6E-6219261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.7E-13223259IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.10E-11224259No hitNo description
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003202.8E-13225260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDDDELHGSN GRMHIGETQD PLHHVHYGHH ALQHIHNGSG MVDDHADTGG GGGMSDGVDT  60
DVPSHPGNIT DNRGEVVDRG SEQGDQLTLS FQGQVYVFDS VLPEKVQAVL LLLGGREVPQ  120
APPTGLGASH QNNRGLPGTP QRFSMPQRLA SLVRFREKRK ERNFDKKIRY TVRKEVALRM  180
QRNKGQFTSA KSNNGEAAAD GSSWESSQTW AIEGSEAHHN QEISCRHCGI GEKSTPMMRR  240
GPEGPRTLCN ACGLMWANKA S*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085770001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655552.10.0GATA transcription factor 28-like isoform X2
RefseqXP_013655558.10.0GATA transcription factor 28-like
SwissprotQ8H1G01e-162GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A078I9150.0A0A078I915_BRANA; BnaA08g01910D protein
STRINGBra014292.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-150ZIM-LIKE 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]