PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085685001
Common NameGSBRNA2T00085685001, LOC106380480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 243aa    MW: 27007.3 Da    PI: 4.4865
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085685001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.4e-08443538
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          C+ +e+ +++l C +++  lC++C +e H        H+
  GSBRNA2T00085685001  4 QCDVCEKAPATLICCSDEAALCASCDVEVHAAnklaskHQ 43
                         7*****************************6556666665 PP

2zf-B_box27.28.3e-095586435
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                         + C+ + ek + +fC +++ llC+dC +++H 
  GSBRNA2T00085685001 55 PPCDICLEKAAFIFCVEDRALLCRDCDEATHA 86
                         68*****************************4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.499147IPR000315B-box-type zinc finger
CDDcd000218.13E-7347No hitNo description
SMARTSM003361.8E-9447IPR000315B-box-type zinc finger
PfamPF006434.0E-6444IPR000315B-box-type zinc finger
SMARTSM003365.9E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501199.3435299IPR000315B-box-type zinc finger
PfamPF006432.0E-65595IPR000315B-box-type zinc finger
CDDcd000217.21E-75598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKIQCDVCEK APATLICCSD EAALCASCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC  60
LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT GIRVALSSTS CSQEVEMNHF  120
DPPNQQILSK PTIQQSAAPS PPWAGDEFFR YSDLECSNKQ KEPLDLGELD WLAEMGFFGD  180
QPDQEALPAA EVPELSVSHL PHVHSYNRPM KSNVSNKKPR LEIRYDDDDD DDEQHFLVPD  240
IG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.84811e-142seed| vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085685001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529610.0AK352961.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675705.11e-180PREDICTED: B-box zinc finger protein 25-like isoform X1
SwissprotQ9SID11e-155BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A078FR991e-180A0A078FR99_BRANA; BnaC04g42410D protein
STRINGBra021734.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27112767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.11e-155salt tolerance homologue
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]