PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084311001
Common NameGSBRNA2T00084311001, LOC106381434
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 294aa    MW: 31428 Da    PI: 8.4802
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084311001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822179.61.4e-5521301123
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas.. 87 
                          ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkgs+++ e++e++gs  s  
  GSBRNA2T00084311001   2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGSSRPvERMEIGGSPCSsn 91 
                          5899*********************************************************************9999****999765523 PP

               DUF822  88 .aspesslqsslkssalaspvesys..aspksssfpsps 123
                           +sp ss+  +l+    +s ++  +  ++++sss  s+s
  GSBRNA2T00084311001  92 fMSPASSSFANLTPGDGQSLIPWLKhlSTTSSSSASSSS 130
                          467777766555555555555444300333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.9E-493130IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG  60
WIVEPDGTTY RKGSSRPVER MEIGGSPCSS NFMSPASSSF ANLTPGDGQS LIPWLKHLST  120
TSSSSASSSS RLPNYLYIPG GSISAPVTPP LSSPTSRGMN QQINNSFFVS STPPSPTRQQ  180
TIPDCEWFSG IQLAQSVPAS PTFSLVSQNP FGFKEAGGGG GGSRMWTPGQ SGTCSPAIPQ  240
TADVPMSEAV VAPPEFAFGS SANGLVKAWE GERIHEVSGS DDLELTLGNS STR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.225970.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084311001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankF9K201e-125AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.
GenBankCP0026841e-125CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankAY0903311e-125AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBankAY0504301e-125AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615912.10.0PREDICTED: BES1/BZR1 homolog protein 4
RefseqXP_013676783.10.0PREDICTED: BES1/BZR1 homolog protein 4
SwissprotQ9ZV881e-156BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A078FQK00.0A0A078FQK0_BRANA; BnaC02g25200D protein
TrEMBLA0A0D3ARI80.0A0A0D3ARI8_BRAOL; Uncharacterized protein
STRINGBra008378.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-135BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]