PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084211001
Common NameGSBRNA2T00084211001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 289aa    MW: 31319.7 Da    PI: 6.4982
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084211001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.91.3e-05447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ +e  e+   C  ++  lC  C ++ H        H++vpl
  GSBRNA2T00084211001  4 QCNVCETAEAAVLCCADEAALCLACDEKVHTAnklagkHQRVPL 47
                         7******99*********************66899999999986 PP

2zf-B_box25.13.7e-085490337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                          +kC+ ++e    +fC +++ llC++C +++H     H
  GSBRNA2T00084211001 54 IPKCDICQEATGFFFCLQDRALLCRKCDVAIH-TvnpH 90
                         689******9999******************9.33452 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000211.02E-6347No hitNo description
SMARTSM003365.0E-9447IPR000315B-box-type zinc finger
SMARTSM003361.6E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.7885299IPR000315B-box-type zinc finger
CDDcd000219.25E-95599No hitNo description
PfamPF006436.5E-65589IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKIQCNVCET AEAAVLCCAD EAALCLACDE KVHTANKLAG KHQRVPLSVS SSSIPKCDIC  60
QEATGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT GIRVGLESTT DTGPSTPSND  120
DKTNERKPPT SEPQKLDLDH HNHQVGLPET KVSDHISTKL PIASSGSAAT GSISQWQIDE  180
IFGLTDFDQS YEYVENNGSS KADTSRRGDS DSSSMMRSGE EDGEDNSNCL GGGETSWAVP  240
QIHSPPTASG LNWPRHFKHQ SMFVPHISSS THNTGSSPNQ RVGKRRRF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.190870.0seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324450.0AC232445.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006F18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648648.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM21e-155BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A078JQX20.0A0A078JQX2_BRANA; BnaAnng29690D protein
STRINGBra003640.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-125light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]