PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084097001
Common NameGSBRNA2T00084097001, LOC106424429
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 180aa    MW: 20895.2 Da    PI: 6.7967
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084097001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.13.8e-1386144563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +++rr+ +NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++ +++ +++ +e+
  GSBRNA2T00084097001  86 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQDSVLKEN 144
                          79************************************************999888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-1482146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.79584147IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.11E-1286135No hitNo description
PfamPF001704.8E-1186144IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-1086135No hitNo description
CDDcd147021.71E-1787135No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MIPAEITGYY QYLSPENLGT LPTEFNIINM PSSPTSSSSL TYLNDLINNN YSSSSIRQDL  60
MMGNNSTSDE DHQHHHHQSI IIVDERKQRR MLSNRESARR SRMRKQRHLD ELWSQVIRLR  120
NENNCLIDKL NRVSETQDSV LKENSKLKEE ASELRQLVCE LKSNKNSDDD NNFVRKLSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084097001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129054.11e-128PREDICTED: basic leucine zipper 43
RefseqXP_013720642.11e-128basic leucine zipper 43
SwissprotQ9FMC26e-31BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A078I9F31e-127A0A078I9F3_BRANA; BnaA02g27460D protein
TrEMBLA0A398ALG31e-127A0A398ALG3_BRACM; Uncharacterized protein
STRINGBo2g138370.11e-122(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.11e-66basic leucine-zipper 48
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]