PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082802001
Common NameGSBRNA2T00082802001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 333aa    MW: 37886.4 Da    PI: 9.0435
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082802001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.21.4e-421012223133
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 
                          +k+drhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k++ik+  ++ + s    ++e+ ++s++       + 
  GSBRNA2T00082802001 101 KKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLISKSKASIKQVKESAAASG---NHEHLQVSDN------VND 181
                          699************************************************************55554...2222233222......112 PP

                  TCP  93 saakskksqksaasalnlakesrakarararertrekmrik 133
                          +++k +k +++    + ++k+sr+kar+rarert  km+++
  GSBRNA2T00082802001 182 ETQKVSKGRTKRVDDSCKKKQSREKARERARERTMTKMKMR 222
                          22244444444444467888*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-35101221IPR005333Transcription factor, TCP
PROSITE profilePS5136935.387102160IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.417201218IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MFPSIDTNGY DLFDPFNLHE ATMLPSFTTH ILSPSSHHHY PFPSSSDFLD ESVLISQFLL  60
QQQADVDSPR KLRRELEQEK KNEEWVDGTT SEKVSPRRTG KKRDRHSKIC TAQGPRDRRM  120
RLSLQIARKF FDLQDMLGFD KASKTIEWLI SKSKASIKQV KESAAASGNH EHLQVSDNVN  180
DETQKVSKGR TKRVDDSCKK KQSREKARER ARERTMTKMK MRLSGLIDTS KTFADPNQVS  240
RKTKIIGGAQ ERENLEQERS IIEKFLGLTS ESSSSTIFGD SEESYTSLGS IRETVSTTGM  300
VIPREHNTTS TASVDEERNP ISTFSLYDYL CY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}.
UniprotTISSUE SPECIFICITY: Expressed in axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082802001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127671.10.0PREDICTED: transcription factor TCP12
SwissprotA0AQW41e-130TCP12_ARATH; Transcription factor TCP12
TrEMBLA0A078I6V20.0A0A078I6V2_BRANA; BnaA02g14010D protein
TrEMBLA0A3P6ARM20.0A0A3P6ARM2_BRACM; Uncharacterized protein
STRINGBra038350.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-120TCP domain protein 12
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]