PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082683001
Common NameGSBRNA2T00082683001, LOC106439888
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 243aa    MW: 26073.1 Da    PI: 10.1055
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082683001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.56.6e-40322062121
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 
                          a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a++ ss++ + s++   
  GSBRNA2T00082683001  32 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTAVRGSSTTISTSANctl 121
                          789******************************************************************999777777777766666788 PP

                  TCP  89 ....................................................kaaksaakskksqksaasalnlakesrakarar 121
                                                                              +++ + ++++++q+++a+al ++++++++a + 
  GSBRNA2T00082683001 122 sspldhkpfilgkrlredsgggkeemgsfatpagfwavparpdfgqvwsfasHQEMFLQQQQQQQQQPAAALFVHQQQQQQAAMG 206
                          888999999999999999999****************************997666666677778888887787777776666544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8923892IPR017887Transcription factor TCP subgroup
PfamPF036342.1E-3338197IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSNNNNDGVM ISNGSLIEHQ QNQKQSSDGA LAVKKPPAKD RHSKVDGRGR RIRMPIICAA  60
RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTAVRGSS TTISTSANCT  120
LSSPLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ  180
QQQQQQQQPA AALFVHQQQQ QQAAMGEASA ARVGNYLPGH LNLLASLSGG APGSGRREDD  240
QR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.139573e-74seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082683001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736882.11e-179transcription factor TCP7
SwissprotQ9FMX21e-103TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A078I4H31e-178A0A078I4H3_BRANA; BnaC02g42220D protein
STRINGBo7g097790.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-63TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]