PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077931001
Common NameGSBRNA2T00077931001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 304aa    MW: 33367.2 Da    PI: 7.1416
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077931001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.4e-08334435
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                          +C+ ++++e++ fC+ ++  lC  C    H+
  GSBRNA2T00077931001  3 IRCDVCDKEEASVFCTADEASLCGGCDHRVHH 34
                         58*************************99974 PP

2zf-B_box34.34.7e-115697237
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         + ++C+ ++ek++ lfC++++  lC+dC +++H+       H
  GSBRNA2T00077931001 56 SSPICDICQEKKALLFCQQDRAILCKDCDSSIHSAneqvkkH 97
                         5689*****************************656566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.523147IPR000315B-box-type zinc finger
CDDcd000218.20E-6334No hitNo description
PfamPF006438.2E-6334IPR000315B-box-type zinc finger
SMARTSM003362.7E-6447IPR000315B-box-type zinc finger
SMARTSM003365.4E-1455102IPR000315B-box-type zinc finger
PROSITE profilePS5011910.45255102IPR000315B-box-type zinc finger
PfamPF006433.7E-95798IPR000315B-box-type zinc finger
CDDcd000211.05E-1158102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKIRCDVCDK EEASVFCTAD EASLCGGCDH RVHHANKLAS KHLRFSLLNP FSSNNSSPIC  60
DICQEKKALL FCQQDRAILC KDCDSSIHSA NEQVKKHDRF LLTGVKLSAT SSVYKPTSES  120
FSSSQDCSVP GPRSSKKPLS APQSNSSKIQ LTSKIGGDAA VNQLGSTSTI SEYLIDALPG  180
WHVEDFLDSS LPPFGFSKSG DDDGVSLQSK NMGLWVPQIP QTLPSSYTNQ YFSQDNNNIQ  240
FGMYNNKETS PEVQMYAPIQ NMKQQGQNKR WYDDDGGFTV PQITAASSHP TTLPSNKRSK  300
SFW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077931001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895861e-91AC189586.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012I05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672764.10.0PREDICTED: B-box zinc finger protein 21-like
SwissprotQ9LQZ71e-163BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A078FKX10.0A0A078FKX1_BRANA; BnaC02g23750D protein
STRINGBra008204.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-156salt tolerance homolog2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]