PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077247001
Common NameGSBRNA2T00077247001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 244aa    MW: 28255.2 Da    PI: 6.3442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077247001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.23e-3237142199
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k ltpsdv+k++rlv+pk++ae++        + + e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F
  GSBRNA2T00077247001  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaavDAV-EKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVVLF 125
                          99*****************************997555.57789*********************************************** PP

                          EE-SSSEE..EEEEE-S CS
                   B3  83 kldgrsefelvvkvfrk 99 
                          ++++ ++++++++++r+
  GSBRNA2T00077247001 126 HRHRADGGRFFIGWRRR 142
                          *88779999******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.5E-4131149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-3034142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-2736132No hitNo description
PROSITE profilePS5086314.07137143IPR003340B3 DNA binding domain
PfamPF023621.7E-2937142IPR003340B3 DNA binding domain
SMARTSM010199.9E-2437143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSINQYSSEF YYHSLMWQQQ QQHHHQNEVV EEKEALFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLAAAAV DAVEKGLLLC FEDEEGKPWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG  120
DVVLFHRHRA DGGRFFIGWR RRGDSSSSSD SYRYLQSNAS LQYYPHAGAQ AVENQRGNSK  180
TLRLFGVNME CQIDSDWSEP STPDGFTTCP TNQDQFPIYP EHYPPPYYMD VSFTGDVHQS  240
QQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-473414511120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175870.0AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141558.11e-166PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ21e-144Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A078I1R30.0A0A078I1R3_BRANA; BnaAnng07660D protein
STRINGBra017262.1-P1e-165(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-121B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]