PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076988001
Common NameGSBRNA2T00076988001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 151aa    MW: 17694.3 Da    PI: 9.728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076988001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.2e-1719110196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f k++  +d +++++ ++p + +++  + +  s ++++  ++g sWev +  +k+++  y+ ++GW++Fv++n L  ++fv+F+++g+++
  GSBRNA2T00076988001  19 FSKTFACADLSSECMRTFPFDLMKSLPK-EDLSNKMVIIAKWGSSWEVDI--SKNPRFyYMEKSGWNQFVRDNALGKNEFVTFTHKGSMC 105
                          6788888899999999999999988853.458889***************..******566669**********************9999 PP

                          E..EEEE CS
                   B3  90 felvvkv 96 
                          f   v +
  GSBRNA2T00076988001 106 F--DVNI 110
                          9..5554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-1713114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-1814117IPR015300DNA-binding pseudobarrel domain
CDDcd100176.51E-1418111No hitNo description
PfamPF023622.0E-1419109IPR003340B3 DNA binding domain
PROSITE profilePS5086311.61719114IPR003340B3 DNA binding domain
SMARTSM010198.4E-1719114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLS NKMVIIAKWG  60
SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEVVR  120
PPTMASSSKA FFTSNDVFMK VRRWRIKKEN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141148RRWRIKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076988001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141415.12e-90PREDICTED: B3 domain-containing protein At3g17010-like
RefseqXP_009141417.12e-90PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ5PNU42e-44Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBLA0A078I2171e-108A0A078I217_BRANA; BnaA04g20470D protein
STRINGBra021943.1-P5e-90(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.26e-46B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]