PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076031001
Common NameGSBRNA2T00076031001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 303aa    MW: 33797.1 Da    PI: 6.798
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076031001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.65.5e-3161183389
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                          g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  ++el+ +                           
  GSBRNA2T00076031001  61 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQVYDLQDRLGLSQPSKVIDWLLEAAKDDVDELPPLqfpqgfnqmypslifgessstsaasaf 150
                          78*************************************************************555555544444444443322222222 PP

                  TCP  66 ..ssssaseceaesssssasnsssg............................k 89 
                            +                     +                            +
  GSBRNA2T00076031001 151 pgT---------------------NlgfleswdlggsssrtrtriadtttttpR 183
                          220.....................133444444443322233333333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.42462120IPR017887Transcription factor TCP subgroup
PfamPF036345.8E-3062198IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRSRDCDEDE IQANQEGDHN HQLNLNSMFQ PQNQPSSVPT SRQWTSAFRN PRIVRVSRTF  60
GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS QPSKVIDWLL EAAKDDVDEL  120
PPLQFPQGFN QMYPSLIFGE SSSTSAASAF PGTNLGFLES WDLGGSSSRT RTRIADTTTT  180
TPRESFDLDK GKWIKQDENN NHQDHGFDTS HQNFSLTNPY NNSNASSYYN LGHLQNSLDQ  240
SGNNVTVAIP NVPYNNNLNL PPPPTMSSLF PMYPSFLGAS HHVVDGAGNL QLFSSNANRN  300
NR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1867121155Putative transcription factor PCF6
5zkt_B3e-1867121155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076031001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511839.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_018511840.10.0PREDICTED: transcription factor TCP5-like
SwissprotQ9FME31e-145TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A078JM830.0A0A078JM83_BRANA; BnaAnng27820D protein
STRINGBra029344.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-125TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]