PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075911001
Common NameGSBRNA2T00075911001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 438aa    MW: 47543.7 Da    PI: 6.6378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075911001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-063323661554
                          HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++ ++++ L++l+ +      +K + a++L +A+eYIk L
  GSBRNA2T00075911001 332 KMSDRIAALQQLVSPF-----GKTDQASVLSEAIEYIKFL 366
                          899***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.144317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-4326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-6327371No hitNo description
SuperFamilySSF474593.53E-11330382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-11331375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSIESGGSAA FHDKLHHSLA TDHHLQMIGL  60
GLSSQSHVDQ WNQSLLRGDS KAETSFGVML QENINLDATS NANANTTSYQ LQESDPSHHQ  120
ALWRDPRINN SDFKPQLNMT SSNNRGFFLD HQFSPHGSSS TDSSTVTCQG FSSDNPSNTL  180
YGPTATTPNS SSAMFHHHHH HQAAGFNMPG SSDQQPSRTH QASNLGYSQF GSSTGNYDQT  240
ALRFSNNATF WNPTAAGNVG PTHHDASSNY FPALQPPQIH APSFDEQPNG MSEIKDSSSS  300
EVKRVGGDQP AAKRAKSEAT SPSPPLKVKK EKMSDRIAAL QQLVSPFGKT DQASVLSEAI  360
EYIKFLHQQV SALSNPYMNS GASLQHQQSD HPKELEVSKE PDLRSQGLCL VPVSSTFPVT  420
HDTTVDFWTT TFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639692.10.0PREDICTED: transcription factor bHLH123-like isoform X1
RefseqXP_013639300.10.0PREDICTED: transcription factor bHLH123-like isoform X1
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A078HX790.0A0A078HX79_BRANA; BnaCnng10760D protein
TrEMBLA0A0D3AC190.0A0A0D3AC19_BRAOL; Uncharacterized protein
STRINGBra023939.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]