PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075524001
Common NameGSBRNA2T00075524001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 178aa    MW: 20687.2 Da    PI: 8.5732
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075524001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.13.8e-1369127563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +r+rr+ +NRe+ArrsR R k++ieeL++ v++L   N+ L +++ +l +   +  +e+
  GSBRNA2T00075524001  69 RRARRMVSNRESARRSRMRTKKQIEELQQQVEQLMILNHNLSEKVIHLLESNHQILQEN 127
                          79*******************************************99999999888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-1165129IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.42767130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-1069125No hitNo description
SuperFamilySSF579591.75E-1069121No hitNo description
PfamPF001702.0E-1069127IPR004827Basic-leucine zipper domain
CDDcd147023.17E-1470121No hitNo description
PROSITE patternPS0003607287IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MESSVHRSHH CFDILEGMSP QDDHFNSAFL PNANFHVPIQ SLPPNSSTHN KNNRSHLNPT  60
IYDNEGLERR ARRMVSNRES ARRSRMRTKK QIEELQQQVE QLMILNHNLS EKVIHLLESN  120
HQILQENSQL KEKVSSFQIL MAEMQIPMRN VDGSINDRVV NHLRGETLNR TNDFFGR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.109183e-92microspore-derived embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075524001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1496350.0AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013721933.11e-113basic leucine zipper 43-like
TrEMBLA0A078HWI91e-126A0A078HWI9_BRANA; BnaAnng06600D protein
STRINGBo2g161130.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.15e-65basic leucine-zipper 70
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]