PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075108001
Common NameGSBRNA2T00075108001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 235aa    MW: 26016 Da    PI: 7.8408
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075108001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.8e-06533634
             zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
                         C+ ++++e++ fC  ++  lC+ C  + H
  GSBRNA2T00075108001  5 CDVCDKEEASVFCCADEAALCNGCDRHVH 33
                         *************************9988 PP

2zf-B_box28.43.3e-095592338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                         ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  GSBRNA2T00075108001 55 APLCDICGERRALLFCQKDRAILCRECDIPIHQAneHT 92
                         789*****************************767876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
SMARTSM003362.3E-7447IPR000315B-box-type zinc finger
CDDcd000213.08E-6533No hitNo description
PROSITE profilePS501199.99753100IPR000315B-box-type zinc finger
SMARTSM003362.5E-1553100IPR000315B-box-type zinc finger
PfamPF006431.6E-75593IPR000315B-box-type zinc finger
CDDcd000214.23E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TPKDAPLCDI  60
CGERRALLFC QKDRAILCRE CDIPIHQANE HTKKHNRFLL TGIKLSASPS AYPRASNSVI  120
SNTNNNNKRA TQSFKTGSNQ TTSAHKDSGF QKLIQPYKSK INNDSGSGSG SGSISEYLME  180
TLPGWRVEDL LEDPSCVSYE DNNNIFTKNN NKGVNDGSSS QYQHQGFWEQ KPFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.219582e-69root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075108001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0288931e-120BT028893.1 Arabidopsis thaliana unknown protein (At4g39070) mRNA, complete cds.
GenBankAK2303791e-120AK230379.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-29-C17.
GenBankAK1188791e-120AK118879.1 Arabidopsis thaliana At4g39070 mRNA for putative zinc finger protein, complete cds, clone: RAFL21-21-B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148051.11e-125PREDICTED: B-box zinc finger protein 20-like
SwissprotQ0IGM71e-111BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A078HXN41e-177A0A078HXN4_BRANA; BnaC01g00140D protein
STRINGBra011879.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-104DBB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]